| Blat 'Em All | primer design tool |
| UCSC pdf downloader | creates pdf from UCSC session using bed files as input (github) |
| XLSX to BED converter | converts XSLX file(s) into BED format (github) |
| XLSX to UCSC BED track converter | converts XSLX file(s) into BED format, which can be directly loaded into the UCSC browser using custom tracks(github) |
| ChIPseq differential peak selector | This script processes multiple .xlsx files, filtering them based on user-specified conditions. The filtered results are then saved in both .XLSX and .BED formats(github) |
| cloupe to SEGEX converter | converts 10X LoupeBrowser output files to SEGEX input files |
| RNASeq pipeline (github) | Standard Waxmanlab RNAseq pipeline |
| waxmanlabvm.bu.edu | main page with UCSC tracks |
| David aggregator script | David aggregator source (github) |
| David heatmap visualization script | David heatmap visualization sources (github) |
| Gene notations Segex-mm10 conversion tool | Notation conversion file between mm9, mm10 and segex notations |
| Encode blacklisted regions | Encode Blacklisted gene regions in Segex platform 4 |
| Segex_76K_GeneCoordinates_GeneLengths | Segex 76K platform 4, genes coordinates and gene lengths |